Donna Huber, Author at Center for Tropical and Emerging Global Diseases

Trainee Spotlight: Corey Rennolds

Donna Huber on January 30, 2024

My name is Corey Rennolds, and I’ve been a postdoctoral researcher in Tania Rozario’s lab at UGA since August 2022. I’m originally from Cobb County, GA, where I went to grade school, received my B.S. in Biology from Georgia Tech in 2013, and completed my PhD at the University of Maryland, College Park in 2022.

What made you want to study science?
The big bucks, baby!! More honestly, I enjoy learning how things work for its own sake, and I liked the idea of a career spent always learning more about how things in the world work. I started as an undergraduate in engineering but quickly switched to biology when I realized that I was more interested in natural systems than artificial ones (and that I wasn’t very good at calculus). I have other interests of course, but science translates the most smoothly of those into a stable and rewarding way to make a living.

Why did you choose UGA?
I’m originally from the Atlanta area and spent a lot of time in Athens when I was an undergraduate, even though I went to Tech. Now living and working here feels like coming home for me. I finished my PhD and wanted to continue in a research-oriented direction as a postdoc in an academic setting, and UGA is a big, well-funded institution with a strong biology contingent and several faculty in the ballpark of my more narrow expertise. Altogether, it seemed like a good fit.

What is your project/research focus and why did you choose this research focus?
Dr. Rozario learned during her own postdoctoral work that the rat tapeworm Hymenolepis diminuta requires a population of stem cells maintained in the adult worm in order to grow and regenerate, but there was little information on how these cells are activated, how many different varieties there are, their plasticity, and how they differentiate into mature tissue types. Dr. Rozario wanted to hire a postdoc with experience in transcriptomics and regenerative biology in non-model organisms, which is fortunately my background. I thought the project was really interesting with opportunity to do novel work that would stand out. It also gives me the chance to learn a lot of cutting-edge techniques that can be valuable for my research in the long term.

Have you received any awards or honors?
Aside from the T32 postdoctoral fellowship through the CTEGD, I received a few scholarships, fellowships, and other awards during graduate school, including small research grants from Sigma Xi, the Cosmos Club, and Washington Biologists’ Field Club. I would also be remiss not to mention my first-place finish in the most recent CTEGD chili cook-off.

What are your career goals?
I spent most of graduate school as a TA (tip for prospective graduate students: ask your PI about funding!) and so racked up plenty of experience in teaching and discovered that I really enjoy doing it. I want teaching to be a significant part of my career activities going forward, as opposed to just full-time research. Research-wise, though, I am interested in building an independent research program focused on bridging evolutionary-developmental biology with comparative and ecological physiology. To put it simply, I want to study how living things grow, develop, and repair themselves, where and how they get the resources to do these things, and how those processes are affected by environmental factors, including over evolutionary timescales. Working with intestinal parasites is definitely an interesting and challenging context for thinking about these sorts of broad questions.

What is your favorite thing about UGA and Athens?
Athens is close enough to Atlanta to access its amenities but far enough away to be its own ecosystem free of the sprawl. It’s big enough to have a little of everything, including a vibrant and diverse arts scene, but small enough to get to know most of the people in whatever sphere you want to be involved in. The university offers plenty of opportunities for both intellectual stimulation and less-intellectual partying. The traffic isn’t too bad.

Any advice for a student interested in this field?
Don’t settle too much. It is perfectly fine to have standards during your education and assert yourself when called for. You should study what you enjoy, attend school somewhere you want to be, and work with people you get along with. Not everything will be perfect and you should learn when to compromise, of course, but it’s your life and your career. If something isn’t working out, make a change, and be open to alternative paths—if I didn’t take the initiative to change course when I did, I wouldn’t be a biologist now. Think carefully about what is in your best interest personally and professionally in both the short and long term. Also, learn when to identify opportunities to learn something useful or gain valuable experience. In CTEGD, there are a lot of different technical resources, training and professional development opportunities, and diverse faculty expertise; make use of all these things, it’s what they’re there for!

Support trainees like Corey by giving today to the Center for Tropical & Emerging Global Diseases.

In Vitro Antimalarial Activity of Trichothecenes against Liver and Blood Stages of Plasmodium Species

Donna Huber on January 23, 2024

Trichothecenes (TCNs) are a large group of tricyclic sesquiterpenoid mycotoxins that have intriguing structural features and remarkable biological activities. Herein, we focused on three TCNs (anguidine, verrucarin A, and verrucarol) and their ability to target both the blood and liver stages of Plasmodium species, the parasite responsible for malaria. Anguidine and verrucarin A were found to be highly effective against the blood and liver stages of malaria, while verrucarol had no effect at the highest concentration tested. However, these compounds were also found to be cytotoxic and, thus, not selective, making them unsuitable for drug development. Nonetheless, they could be useful as chemical probes for protein synthesis inhibitors due to their direct impact on parasite synthesis processes.

Prakash T Parvatkar, Steven P Maher, Yingzhao Zhao, Caitlin A Cooper, Sagan T de Castro, Julie Péneau, Amélie Vantaux, Benoît Witkowski, Dennis E Kyle, Roman Manetsch. J Nat Prod. 2024 Jan 23. doi: 10.1021/acs.jnatprod.3c01019.

Diego Huet zeroes in on parasite that affects thousands each year

Donna Huber on January 8, 2024

From an early age, Diego Huet has been interested in the unusual and fascinating found in the natural world.

His early encounters with animals, plants and insects nurtured his curiosity about nature. Their striking colors and sometimes strange shapes drew his interest, and even today he continues to capture them through macro photography. It was this fascination that led him to the parasite he studies today.

“I was always drawn to ‘unconventional’ or ‘weird’ science,” said Huet, an assistant professor in the College of Pharmacy’s Department of Pharmaceutical and Biomedical Sciences and member of the Center for Tropical and Emerging Global Diseases. “But I also wanted to be hands on, which is what led me to molecular and cellular biology.”

As a doctoral student, Huet began studying Trypanosoma brucei, a parasite commonly transmitted by the tsetse fly. Wanting to study a different parasite as a postdoctoral researcher, he was torn between studying Plasmodium, which is the causative agent of malaria, and Toxoplasma gondii, a related parasite that is carried by cats. Both parasites, which belong to a group of organisms called apicomplexans, cause diseases in humans and animals, and there remain large knowledge gaps in our basic understanding of them. Ultimately, he chose the latter.

“Plasmodium is difficult to manipulate,” Huet said. “Toxoplasma is related to Plasmodium, but is easier to work with because it isn’t as complex, and what we learn about Toxo could also increase our knowledge of Plasmodium.”

Just as yeast and fruit flies are used as model organisms to study human biology, Toxoplasma can be used as a model for shared features of apicomplexan biology.

Besides aiding in the understanding of other parasites of human and veterinary concern, including parasites that cause malaria in tropical and subtropical regions of the world, Toxoplasma gondii also causes human and animal disease. More than 40 million people in the U.S. are estimated to carry T. gondii. Although most never show symptoms, it poses a major health threat to immunocompromised individuals and pregnant women as it can lead to miscarriage and birth defects. Toxoplasmosis, the disease caused by Toxoplasma, is considered a leading cause of death among foodborne illnesses though it can also be transmitted through contact with cat feces.

The Centers for Disease Control and Prevention has it listed as a neglected parasitic infection in the United States and a target for public health action.

Huet joined the faculty at the University of Georgia in 2019 and has developed a robust research program to expand knowledge of the basic biology of Toxoplasma.

In a recently published study in “mBio”, cellular biology doctoral candidate and Huet Lab member Madelaine Usey looked at proteins critical for mitochondrial function in T. gondii. The mitochondrion is considered the “powerhouse of the cell,” but it is an enzyme called ATP synthase that generates the cellular energy.

“Our findings are really exciting for drug discovery,” Usey said. “Many of the proteins that make up the ATP synthase are different in Toxoplasma compared to other organisms. In this study, we were able to figure out what two of those novel subunits are doing—they act as scaffolding for this enormous ATP synthase complex.”

These proteins are unique to Toxoplasma and could be used in drug discovery as targets since they are important for mitochondrial functioning.

Another project in Huet’s laboratory, which recently received funding through a grant from the National Institute of General Medical Sciences, investigates how organelles within the parasite communicate.

“Traditionally, we thought organelles send and receive calcium and other metabolites in much the same way we receive a package through the mail,” Huet said. “Cells form vesicles to transport materials to specific locations within the cell. The vesicles are labeled with proteins that act like a postal address, telling the vesicle where to go.”

However, cells can also exchange material through another process.

“When the organelles’ membranes get close together, they form what is called a membrane contact site,” Huet said. “In this case it is more like one organelle hand delivers the package to another.”

A membrane contact site is a specialized protein structure that organelles use for intracellular communication. However, it is not a well understood structure in apicomplexans. In addition, these parasites have additional organelles not found in traditional models like humans and yeast, so Huet is trying to understand how the organellar communication is happening in apicomplexans using Toxoplasma as a model.

Identifying such proteins and their functions could lead to better drug targets and better drug treatments, which all the neglected parasitic diseases need.

“Toxo’s genome isn’t well annotated,” Huet said. “Finding membrane contact site proteins is an arduous task—it’s a goal of my lab to identify some of them and their involvement in Toxoplasma membrane contact sites.”

This article was first published at https://research.uga.edu/news/diego-huet-zeroes-in-on-parasite-that-affects-thousands-each-year/

Genetic crosses within and between species of Cryptosporidium

Donna Huber on January 2, 2024

Figure 1 PheRS can be used as a selection marker for stable transgenesis. — PheRS can be used as a selection marker for stable transgenesis.

Parasites and their hosts are engaged in reciprocal coevolution that balances competing mechanisms of virulence, resistance, and evasion. This often leads to host specificity, but genomic reassortment between different strains can enable parasites to jump host barriers and conquer new niches. In the apicomplexan parasite Cryptosporidium, genetic exchange has been hypothesized to play a prominent role in adaptation to humans. The sexual lifecycle of the parasite provides a potential mechanism for such exchange; however, the boundaries of Cryptosporidium sex are currently undefined. To explore this experimentally, we established a model for genetic crosses. Drug resistance was engineered using a mutated phenylalanyl tRNA synthetase gene and marking strains with this and the previously used Neo transgene enabled selection of recombinant progeny. This is highly efficient, and genomic recombination is evident and can be continuously monitored in real time by drug resistance, flow cytometry, and PCR mapping. Using this approach, multiple loci can now be modified with ease. We demonstrate that essential genes can be ablated by crossing a Cre recombinase driver strain with floxed strains. We further find that genetic crosses are also feasible between species. Crossing Cryptosporidium parvum, a parasite of cattle and humans, and Cryptosporidium tyzzeri a mouse parasite resulted in progeny with a recombinant genome derived from both species that continues to vigorously replicate sexually. These experiments have important fundamental and translational implications for the evolution of Cryptosporidium and open the door to reverse- and forward-genetic analysis of parasite biology and host specificity.

Sebastian Shaw, Ian S Cohn, Rodrigo P Baptista, Guoqin Xia, Bruno Melillo, Fiifi Agyabeng-Dadzie, Jessica C Kissinger, Boris Striepen. Proc Natl Acad Sci USA. 2024 Jan 2;121(1):e2313210120. doi: 10.1073/pnas.2313210120.

Aptamer-Based Imaging of Polyisoprenoids in the Malaria Parasite

Donna Huber on December 28, 2023

Figure 1. Schemes of the positive and negative selection cycles are illustrated.

Dolichols are isoprenoid end-products of the mevalonate and 2C-methyl-D-erythritol-4-phosphate pathways. The synthesis of dolichols is initiated with the addition of several molecules of isopentenyl diphosphate to farnesyl diphosphate. This reaction is catalyzed by a cis-prenyltransferase and leads to the formation of polyprenyl diphosphate. Subsequent steps involve the dephosphorylation and reduction of the α-isoprene unit by a polyprenol reductase, resulting in the generation of dolichol. The size of the dolichol varies, depending on the number of isoprene units incorporated. In eukaryotes, dolichols are synthesized as a mixture of four or more different lengths. Their biosynthesis is predicted to occur in the endoplasmic reticulum, where dolichols play an essential role in protein glycosylation. In this study, we have developed a selection of aptamers targeting dolichols and enhanced their specificity by incorporating fatty acids for negative selection. One aptamer showed high enrichment and specificity for linear polyisoprenoids containing at least one oxygen atom, such as an alcohol or aldehyde, in the α-isoprene unit. The selected aptamer proved to be a valuable tool for the subcellular localization of polyisoprenoids in the malaria parasite. To the best of our knowledge, this is the first time that polyisoprenoids have been localized within a cell using aptamer-based imaging techniques.

Flavia M Zimbres, Emilio F Merino, Grant J Butschek, Joshua H Butler, Frédéric Ducongé, Maria B Cassera. Molecules. 2023 Dec 28;29(1):178. doi: 10.3390/molecules29010178.

Inherently Reduced Expression of ASC Restricts Caspase-1 Processing in Hepatocytes and Promotes Plasmodium Infection

Donna Huber on December 27, 2023

Fig. 1 Inherently reduced expression of pro–caspase-1 and ASC in hepatocytes. — Inherently reduced expression of pro–caspase-1 and ASC in hepatocytes.

Inflammasome-mediated caspase-1 activation facilitates innate immune control of Plasmodium in the liver, thereby limiting the incidence and severity of clinical malaria. However, caspase-1 processing occurs incompletely in both mouse and human hepatocytes and precludes the generation of mature IL-1β or IL-18, unlike in other cells. Why this is so or how it impacts Plasmodium control in the liver has remained unknown. We show that an inherently reduced expression of the inflammasome adaptor molecule apoptosis-associated specklike protein containing CARD (ASC) is responsible for the incomplete proteolytic processing of caspase-1 in murine hepatocytes. Transgenically enhancing ASC expression in hepatocytes enabled complete caspase-1 processing, enhanced pyroptotic cell death, maturation of the proinflammatory cytokines IL-1β and IL-18 that was otherwise absent, and better overall control of Plasmodium infection in the liver of mice. This, however, impeded the protection offered by live attenuated antimalarial vaccination. Tempering ASC expression in mouse macrophages, on the other hand, resulted in incomplete processing of caspase-1. Our work shows how caspase-1 activation and function in host cells are fundamentally defined by ASC expression and offers a potential new pathway to create better disease and vaccination outcomes by modifying the latter.

Camila Marques-da-Silva, Clyde Schmidt-Silva, Rodrigo P Baptista, Samarchith P Kurup. J Immunol. 2023 Dec 27:ji2300440. doi: 10.4049/jimmunol.2300440. Online ahead of print.

On the origin and evolution of the mosquito male-determining factor Nix

Donna Huber on December 21, 2023

The mosquito family Culicidae is divided into two subfamilies named the Culicinae and Anophelinae. Nix, the dominant male-determining factor, has only been found in the culicines Aedes aegypti and Ae. albopictus, two important arboviral vectors that belong to the subgenus Stegomyia. Here we performed sex-specific whole-genome sequencing and RNAseq of divergent mosquito species and explored additional male-inclusive datasets to investigate the distribution of Nix. Except for the Culex genus, Nix homologs were found in all species surveyed from the Culicinae subfamily, including 12 additional species from three highly divergent tribes comprising 4 genera, suggesting Nix originated at least 133-165 MYA. Heterologous expression of one of three divergent Nix ORFs in Ae. aegypti resulted in partial masculinization of genetic females as evidenced by morphology and doublesex splicing. Phylogenetic analysis suggests Nix is related to femaleless (fle), a recently described intermediate sex-determining factor found exclusively in anopheline mosquitoes. Nix from all species has a conserved structure, including three RNA-recognition motifs (RRMs), as does fle. However, Nix has evolved at a much faster rate than fle. The RRM3 of both Nix and fle are distantly related to the single RRM of a widely distributed and conserved splicing factor transformer-2 (tra2). RRM3-based phylogenetic analysis suggests this domain in Nix and fle may have evolved from tra2 or a tra2-related gene in a common ancestor of mosquitoes. Our results provide insights into the evolution of sex-determination in mosquitoes and will inform broad applications of mosquito-control strategies based on manipulating sex ratios towards the non-biting males.

James K Biedler, Azadeh Aryan, Yumin Qi, Aihua Wang, Ellen O Martinson, Daniel A Hartman, Fan Yang, Atashi Sharma, Katherine S Morton, Mark Potters, Chujia Chen, Stephen L Dobson, Gregory D Ebel, Rebekah C Kading, Sally Paulson, Rui-De Xue, Michael R Strand, Zhijian Tu. Mol Biol Evol. 2023 Dec 21:msad276. doi: 10.1093/molbev/msad276. Online ahead of print.

Atlas of Plasmodium falciparum intraerythrocytic development using expansion microscopy

Donna Huber on December 18, 2023

Ultrastructural expansion microscopy (U-ExM) workflow and summary of parasite structures imaged in this study.

Apicomplexan parasites exhibit tremendous diversity in much of their fundamental cell biology, but study of these organisms using light microscopy is often hindered by their small size. Ultrastructural expansion microscopy (U-ExM) is a microscopy preparation method that physically expands the sample by ~4.5×. Here, we apply U-ExM to the human malaria parasite Plasmodium falciparum during the asexual blood stage of its lifecycle to understand how this parasite is organized in three dimensions. Using a combination of dye-conjugated reagents and immunostaining, we have cataloged 13 different P. falciparum structures or organelles across the intraerythrocytic development of this parasite and made multiple observations about fundamental parasite cell biology. We describe that the outer centriolar plaque and its associated proteins anchor the nucleus to the parasite plasma membrane during mitosis. Furthermore, the rhoptries, Golgi, basal complex, and inner membrane complex, which form around this anchoring site while nuclei are still dividing, are concurrently segregated and maintain an association to the outer centriolar plaque until the start of segmentation. We also show that the mitochondrion and apicoplast undergo sequential fission events while maintaining an association with the outer centriolar plaque during cytokinesis. Collectively, this study represents the most detailed ultrastructural analysis of P. falciparum during its intraerythrocytic development to date and sheds light on multiple poorly understood aspects of its organelle biogenesis and fundamental cell biology.

Benjamin Liffner, Ana Karla Cepeda Diaz, James Blauwkamp, David Anaguano, Sonja Frolich, Vasant Muralidharan, Danny W Wilson, Jeffrey D Dvorin, Sabrina Absalon. Elife. 2023 Dec 18:12:RP88088. doi: 10.7554/eLife.88088.

Advances in the cellular biology, biochemistry, and molecular biology of acidocalcisomes

Donna Huber on December 15, 2023

Fig 1 Ultrastructure of acidocalcisomes.

Acidocalcisomes are organelles conserved during evolution and closely related to the so-called volutin granules of bacteria and archaea, to the acidocalcisome-like vacuoles of yeasts, and to the lysosome-related organelles of animal species. All these organelles have in common their acidity and high content of polyphosphate and calcium. They are characterized by a variety of functions from storage of phosphorus and calcium to roles in Ca²⁺ signaling, osmoregulation, blood coagulation, and inflammation. They interact with other organelles through membrane contact sites or by fusion, and have several enzymes, pumps, transporters, and channels.

Roberto Docampo. Microbiol Mol Biol Rev. 2023 Dec 15:e0004223. doi: 10.1128/mmbr.00042-23.

Optimized strategy for real-time qPCR detection of Onchocerca volvulus DNA in pooled Simulium sp. blackfly vectors

Donna Huber on December 14, 2023

Fig 1. Workflow for the selection of the optimal qPCR assay.

Background: Onchocerca volvulus is a filarial parasite that is a major cause of dermatitis and blindness in endemic regions primarily in sub-Saharan Africa. Widespread efforts to control the disease caused by O. volvulus infection (onchocerciasis) began in 1974 and in recent years, following successful elimination of transmission in much of the Americas, the focus of efforts in Africa has moved from control to the more challenging goal of elimination of transmission in all endemic countries. Mass drug administration (MDA) with ivermectin has reached more than 150 million people and elimination of transmission has been confirmed in four South American countries, with at least two African countries having now stopped MDA as they approach verification of elimination. It is essential that accurate data for active transmission are used to assist in making the critical decision to stop MDA, since missing low levels of transmission and infection can lead to continued spread or recrudescence of the disease.

Methodology/principal findings: Current World Health Organization guidelines for MDA stopping decisions and post-treatment surveillance include screening pools of the Simulium blackfly vector for the presence of O. volvulus larvae using a PCR-ELISA-based molecular technique. In this study, we address the potential of an updated, practical, standardized molecular diagnostic tool with increased sensitivity and species-specificity by comparing several candidate qPCR assays. When paired with heat-stable reagents, a qPCR assay with a mitochondrial DNA target (OvND5) was found to be more sensitive and species-specific than an O150 qPCR, which targets a non-protein coding repetitive DNA sequence. The OvND5 assay detected 19/20 pools of 100 blackfly heads spiked with a single L3, compared to 16/20 for the O150 qPCR assay.

Conclusions/significance: Given the improved sensitivity, species-specificity and resistance to PCR inhibitors, we identified OvND5 as the optimal target for field sample detection. All reagents for this assay can be shipped at room temperature with no loss of activity. The qPCR protocol we propose is also simpler, faster, and more cost-effective than the current end-point molecular assays.

Mary Doherty, Jessica R Grant, Nils Pilotte, Sasisekhar Bennuru, Kerstin Fischer, Peter U Fischer, Sara Lustigman, Thomas B Nutman, Kenneth Pfarr, Achim Hoerauf, Thomas R Unnasch, Hassan K Hassan, Samuel Wanji, Patrick J Lammie, Eric Ottesen, Charles Mackenzie, Steven A Williams. PLoS Negl Trop Dis. 2023 Dec 14;17(12):e0011815. doi: 10.1371/journal.pntd.0011815.

Author: Donna Huber